Stem-loop sequence stu-MIR482e

Accession

MI0020249 (change log)

Description

Solanum tuberosum miR482e stem-loop

Gene family

MIPF0000403; MIR482

Literature search

9 open access papers mention stu-MIR482e
(45 sentences)

Stem-loop

   ----   uu     g  g   u              -            -ua     u 
5'     gug  ucggg ag ugu ggaguggguggugu gguaagauuuca   uuuau u
       |||  ||||| || ||| |||||||||||||| ||||||||||||   ||||| u
3'     uac  agccu uc gua ccuuacccgccaua ccguucuagagu   aaaua c
   ucuu   -u     -  g   u              a            uaa     c 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138014.1: 542533-542643 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR482e

• stu-MIR482e: JH138014.1: 542533-542643 [-]
• stu-MIR482b: JH138014.1: 538021-538142 [-]

Database links

• RNAcentral:URS000079DC36_4113
• miRBase Tracker:MI0020249

Mature sequence stu-miR482e-5p

• Accession: MIMAT0031163
• Sequence: 21 - aguggguggugugguaagauu - 41
• Evidence: experimental; Illumina [2]

Mature sequence stu-miR482e-3p

• Accession: MIMAT0023601
• Sequence: 70 - ucuugccaauaccgcccauucc - 91
• Evidence: experimental; Illumina [2]

References

1. PMID:22307647 "MicroRNA regulation of plant innate immune receptors" Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B Proc Natl Acad Sci U S A. 109:1790-1795(2012).
2. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).