Stem-loop sequence stu-MIR482b

Accession

MI0020245 (change log)

Description

Solanum tuberosum miR482b stem-loop

Gene family

MIPF0000403; MIR482

Literature search

8 open access papers mention stu-MIR482b
(38 sentences)

Stem-loop

   ----     uuu a       u          u  -ca         a   u    ug     c 
5'     gaaug   c gggagcu uuggaguggg gg   ugguaagau uca auuu  uuuuu a
       |||||   | ||||||| |||||||||| ||   ||||||||| ||| ||||  |||||  
3'     uuuac   g ccuucgg aaccuuaccc cc   gccauucua agu uaag  aaaaa u
   ccuc     --u a       u          c  uua         a   -    gu     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138014.1: 538021-538142 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR482b

• stu-MIR482e: JH138014.1: 542533-542643 [-]
• stu-MIR482b: JH138014.1: 538021-538142 [-]
• stu-MIR482d: JH138014.1: 531315-531424 [-]
• stu-MIR482c: JH138014.1: 530969-531103 [-]

Database links

• RNAcentral:URS00007B61DF_4113
• miRBase Tracker:MI0020245

Mature sequence stu-miR482b-5p

• Accession: MIMAT0031160
• Sequence: 21 - ggaguggguggcaugguaaga - 41
• Evidence: experimental; Illumina [2]

Mature sequence stu-miR482b-3p

• Accession: MIMAT0023597
• Sequence: 81 - uuaccgauuccccccauuccaa - 102
• Evidence: experimental; Illumina [2]

References

1. PMID:22307647 "MicroRNA regulation of plant innate immune receptors" Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B Proc Natl Acad Sci U S A. 109:1790-1795(2012).
2. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).