Stem-loop gma-MIR5777

Accession

MI0019727

Description

Glycine max gma-MIR5777 precursor miRNA

Sequence

gcugaugcuaggugcaccagcauuauugcuggugcauccagcacuuaaagagaaaagacuaaaauaucucugauucauaagucuuuuacggaucaaaugcuuaauaucaacauacgaaucaacuuaauuuauauuaaucuuacggaucaacucgauccauacaauuuacggaucacucucacgcacaccuagcacaaaugugaagaaaguguaCUAGCAAUAAUGUUGGAUGCACcuagcaucag
.((((((((((((((((((((((((((((((((((((..((((........(((((((((.....(((...))).....)))))))).)........))))......................(((((....)))))......(((((.....)))))..............((((......((.......))......)))).....))))))))))))))))))))).)))))))))))))))

Structure

g               -                     ---------------------------------------------------------------------------------------------------------cc    cuuaaaga -        aaaau   u 
 cugaugcuaggugca ccagcauuauugcuggugcau                                                                                                           agca        g aaaagacu     auc  
 ||||||||||||||| |||||||||||||||||||||                                                                                                           ||||        | ||||||||     ||| c
 gacuacgaucCACGU GGUUGUAAUAACGAUCaugug                                                                                                           ucgu        c uuuucuga     uag  
-               A                     aaagaaguguaaacacgauccacacgcacucucacuaggcauuuaacauaccuagcucaacuaggcauucuaauuauauuuaauucaacuaagcauacaacuauaau    aaacuagg a        auacu   u 

Annotation confidence Not enough data

Genome context

chr5: 4583480-4583724 [-]

Mature gma-miR5777

• Accession: MIMAT0023182
• Description: Glycine max gma-miR5777 mature miRNA
• Sequence: 214 - CUAGCAAUAAUGUUGGAUGCAC - 235
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553