Stem-loop gma-MIR5770a

Accession

MI0019712

Description

Glycine max gma-MIR5770a precursor miRNA

Gene family

MIPF0001501; MIR5770

Literature search

3 open access papers mention gma-MIR5770a
(3 sentences)

Sequence

ggauauuucuUUAGGACUAUGGUUUGGACGAgucacuacucagcagagaacaugcuaauugauuugugugcaccgcaaaaggggaauaagauuuucuaccuauggcgagguauaugucuguugauuuugguuauguucucauaacuuuuauuguuuucagcuuuuaguccaaaaucgugcagagcuugauaacacagaagaguucaguugccacuuguccaauccauaguuuuaaaggaaugaaccc
((.(((((((((((((((((((.((((((((((..(.(((.(((.((((((((((((((((((.(((((((..(((...(((((((.......)))).)))...)))..)))))))...))))))..))).)))))))))....(((((..((((.((((((((..((.(......).))))))).))).)))).))))).))).))).)..)))))))))).)))))))))))))))))))..)).

Structure

-  -a                   U          ca u   c   ------------------------------------------------------------a         -   --      --u       ac   aaa   -    ua 
 gg  uauuucuUUAGGACUAUGG UUGGACGAgu  c acu agc                                                             gagaacaug cua  auugau   ugugugc  cgc   agg ggaa  a
 ||  ||||||||||||||||||| ||||||||||  | ||| |||                                                             ||||||||| |||  ||||||   |||||||  |||   ||| ||||  g
 cc  guaaggaaauuuugauacc aaccuguuca  g uga uug                                                             cucuuguau ggu  uaguug   guauaug  gcg   ucc ucuu  a
c  aa                   u          cc u   c   agaagacacaauaguucgagacgugcuaaaaccugauuuucgacuuuuguuauuuucaaua         u   uu      ucu       ga   gua   a    uu 

Annotation confidence Not enough data

Genome context

chr18: 46351571-46351817 [-]

Mature gma-miR5770a

• Accession: MIMAT0023167
• Description: Glycine max gma-miR5770a mature miRNA
• Sequence: 11 - UUAGGACUAUGGUUUGGACGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553