Stem-loop gma-MIR5769

Accession

MI0019711

Description

Glycine max gma-MIR5769 precursor miRNA

Literature search

1 open access papers mention gma-MIR5769
(1 sentences)

Sequence

uuuaucuccuucgucggcaucauugacuugacauauuugcauauagaguauuguacaggauuaaaaaaauaaauuuaauggcauuuucaacggccaaaagcaugauucaacuuaagaccaugaagggaauauaaugugaUGAGGGAAAUGAAGACGACGAaguagucaaa
.....((.((((((((.(.(((((..(((.(((((((........((((..(((.....((((((........))))))(((..........)))....)))..)))).........((.....))......)))))).).)))..))))).).)))))))).)).....

Structure

uuuau  c        g a     ga   g -      ----------------ugcauaua    au   ---------------acagg      aaa 
     cu cuucgucg c ucauu  cuu a cauauu                        gagu  ugu                    auuaaa   a
     || |||||||| | |||||  ||| | ||||||                        ||||  |||                    ||||||    
     ga gaAGCAGC G AGUAA  GGA U guguaa                        cuua  acg                    uaauuu   u
aaacu  u        A A     AG   G a      uauaagggaaguaccagaauucaa    gu   aaaaccggcaacuuuuacgg      aaa 

Annotation confidence Not enough data

Genome context

chr18: 7386834-7387003 [+]

Mature gma-miR5769

• Accession: MIMAT0023166
• Description: Glycine max gma-miR5769 mature miRNA
• Sequence: 140 - UGAGGGAAAUGAAGACGACGA - 160
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553