Stem-loop sequence mtr-MIR396c

AccessionMI0019664 (change log)
DescriptionMedicago truncatula miR396c stem-loop
Gene family MIPF0000047; MIR396
Literature search

4 open access papers mention mtr-MIR396c
(9 sentences)

Stem-loop 
   -----uuuau    g   uucu                          c   auugcaugguuucucaau 
5'           ggau guc    uagugguuuuccacggcuuucuugaa ugu                  g
             |||| |||    |||||||||||||||||||||||||| |||                   
3'           ucua uag    gucacuaaaaggugcuggaagaacuu acg                  c
   uuuuucuugg    g   ---u                          a   cgauuaacuuuaauacaa
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (JCVI_Mt3.5.2) Overlapping transcripts
chr1: 3016845-3016978 [-]
intergenic
Database links

Mature sequence mtr-miR396c

Accession MIMAT0023119
Sequence

89 -  

auucaagaaggucguggaaaa

 - 109

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Evidence experimental; Illumina [1]

References

1
PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).