Stem-loop sequence mtr-MIR167b

Accession

MI0019092 (change log)

Description

Medicago truncatula miR167b stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

3 open access papers mention mtr-MIR167b
(14 sentences)

Stem-loop

   caa      u       g              g   u  uuccugu   uau    uaau      cuga            c      a   a   u        uaa 
5'    ugacag ugaagcu ccagcaugaucugu cuu cc       gua   acuu    uuccag    auuuaaauauaa caaaaa aua aua guuugguc   a
      |||||| ||||||| |||||||||||||| ||| ||       |||   ||||    ||||||    |||||||||||| |||||| ||| ||| ||||||||    
3'    auuguc acuucga gguuguacuagaca gaa gg       uau   ugag    gggguc    ugaauuuguauu guuuuu uau uau caaacuag   u
   uaa      c       -              a   u  ---uguu   --u    ---u      ----            c      a   a   u        uuu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 37444819-37445025 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019092

Mature sequence mtr-miR167b-5p

• Accession: MIMAT0022233
• Previous IDs: mtr-miR167b
• Sequence: 11 - ugaagcugccagcaugaucug - 31
• Evidence: experimental; Illumina [1-2]

Mature sequence mtr-miR167b-3p

• Accession: MIMAT0022234
• Previous IDs: mtr-miR167b*
• Sequence: 180 - gaucauguuggagcuucacc - 199
• Evidence: experimental; Illumina [1]

References

1. PMID:21762498 "Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing" Wang T, Chen L, Zhao M, Tian Q, Zhang WH BMC Genomics. 12:367(2011).
2. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).