miRBase entry: osa-MIR5532

Stem-loop osa-MIR5532


Accession
MI0019052
Description
Oryza sativa osa-MIR5532 precursor miRNA


Sequence

11 reads, 16 reads per million, 2 experiments
ccucuuuuggauucuuaagaccacccuuguaguaggauaccgucugcuuuggguucuuuauuauauuaucuccuucgagggauuuuuaggaucguuuaggcuauauuuagucuauuuuggcuAUGGAAUAUAUGACAAAGGUGGagucuuggag
((......))..(((.(((((((((.((((.(((..((.((((..(((...((((((..........(((((......)))))....))))))...(((((((....)))))))....))).)))).)).))).)))).)))))..))))))).

Structure
ccucuuuuggau   u    --     c    a   gg  a    cu   ----------------------uug      uuauuauauu     cu 
            ucu aaga  ccacc uugu gua  au ccgu  gcu                         gguucu          aucuc  u
            ||| ||||  ||||| |||| |||  || ||||  |||                         ||||||          |||||   
            agg uucu  GGUGG AACA UAU  UA GGUA  cgg                         cuagga          uaggg  c
-----------g   -    ga     A    G   -A  A    -u   uuuuaucugauuuauaucggauuug      ------uuuu     ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr4: 23647854-23648007 [+]

Database links

Mature osa-miR5532

Accession MIMAT0022167
Description Oryza sativa osa-miR5532 mature miRNA
Sequence 123 - AUGGAAUAUAUGACAAAGGUGG - 144
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53