Stem-loop sequence osa-MIR5527

Accession

MI0019047 (change log)

Description

Oryza sativa miR5527 stem-loop

Literature search

1 open access papers mention osa-MIR5527
(1 sentences)

Stem-loop

   ---------------------------------  -a   c    -  c  c   -      --aa     --    aauucgagugguguaggagcaucugaugaaccaacauccgcaguuuuguuucgccacuguuccuaucaagcucuucgucauguuuaugcguuauccugauccaguacccuccuaaaugacuauca 
5'                                  ug  aga aguu cu ag cag ggcagu    caggu  accc                                                                                                                             u
                                    ||  ||| |||| || || ||| ||||||    |||||  ||||                                                                                                                              
3'                                  ac  ucu ucaa ga uc guc ccguca    guuua  uggg                                                                                                                             c
   aacauagguuacucgaacagagucccuagucuc  gg   -    c  c  c   a      cgcg     au    acaagaaucguuuccuucuuccuaaggugcccuaguaggaucuaagucuagcggaaagacaguagguugcuuagugcguaggcccucaucuuucgauccgacacucuuacuaucuguaguccuuc 

Deep sequencing

1 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr11: 9589960-9590324 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR5527

• osa-MIR5528: Chr11: 9586987-9587059 [-]
• osa-MIR5527: Chr11: 9589960-9590324 [+]

Database links

• miRBase Tracker:MI0019047

Mature sequence osa-miR5527

• Accession: MIMAT0022162
• Sequence: 11 - ucucagccagggcaguaacag - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).