miRBase entry: osa-MIR5503

Stem-loop osa-MIR5503


Accession
MI0019021
Description
Oryza sativa osa-MIR5503 precursor miRNA


Sequence

5 reads, 5 reads per million, 2 experiments
uuuugcuagaccucccuccuaucaggaucugaagccaaccuauuacuauuagccauacaguuuugcaaacugauucugauucuucuaaggaucugauucacggagaauccuuuggauuuccuuuuuugaucaaugauaaccucugcauuguugucauagcguauuauuauaccaucuucgcauuugaacucuuuacauguauguacaauuacaccucaaauuacUUCGGAUCUUUCUAGAGGCAUUuggggcacug
...((((.......((((.((..(((((((((((.....(((.......))).....((((((...)))))).....((((((....))))))(((((...(((((.(((...))))))))......)))))((((((((.........))))))))...((((....)))).......((((.((((...)))).)))).((((....))))..........)))))))))))..)))))).......))))...

Structure
uuu    agaccuc    c  uc           --------------------------------ccaaccuauuacuauuagccauacaguuuugcaaacugauucugauucuucuaaggauc     ---cac     a   u 
   ugcu       ccuc ua  aggaucugaag                                                                                           ugauu      ggaga ucc  
   ||||       |||| ||  |||||||||||                                                                                           |||||      ||||| ||| u
   acgg       GGAG AU  UUCUAGGCUUc                                                                                           acuag      ccuuu agg  
guc    gguUUAC    -  CU           auuaaacuccacauuaacauguauguacauuucucaaguuuacgcuucuaccauauuauuaugcgauacuguuguuacgucuccaauagua     uuuuuu     -   u 


Annotation confidence Not enough data
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Genome context
Chr8: 10797422-10797677 [-]

Database links

Mature osa-miR5503

Accession MIMAT0022136
Description Oryza sativa osa-miR5503 mature miRNA
Sequence 225 - UUCGGAUCUUUCUAGAGGCAUU - 246
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53