Stem-loop aau-MIR396

Accession

MI0018981

Description

Acacia auriculiformis aau-MIR396 precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention aau-MIR396
(5 sentences)

Sequence

agcuauggcucucucuguauucUUCCACAGCUUUCUUGAACUGcaucgaucgaagaaagagcaagcuuuguucucucuuacaugcaugccaaaucgucuucucgcgguucaauaaagcugugggaagauacagauagggucaacca
.....(((((((.((((((((.((((((((((((.(((((((((...((..(((((..(((((.((..(((........))).)).)))....)).)))))))))))))))).)))))))))))).)))))))).)))))))....

Structure

agcua       c        c            C         auc  uc     aa  ----   a  uu   ucu 
     uggcucu ucuguauu UUCCACAGCUUU UUGAACUGc   ga  gaaga  ga    gca gc  ugu   c
     ||||||| |||||||| |||||||||||| |||||||||   ||  |||||  ||    ||| ||  |||    
     acuggga agacauag agggugucgaaa aacuuggcg   cu  cuucu  cu    cgu cg  aca   u
-acca       u        a            u         ---  --     -g  aaac   a  -u   uuc 

Annotation confidence Not enough data

Genome context

Unknown

Mature aau-miR396

• Accession: MIMAT0022674
• Description: Acacia auriculiformis aau-miR396 mature miRNA
• Sequence: 23 - UUCCACAGCUUUCUUGAACUG - 43
• Evidence: not_experimental

References

1. PubMed ID: 21729267
   Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
   Wong MM, Cannon CH, Wickneswari R
   BMC Genomics (2011) 12:342