Stem-loop sequence sbi-MIR5384

Accession

MI0018691 (change log)

Description

Sorghum bicolor miR5384 stem-loop

Literature search

1 open access papers mention sbi-MIR5384
(1 sentences)

Stem-loop

   ggggaacca  aagc       c   c     c    c     ca        -  c 
5'          gg    ggcgccg cgc gggcc uugg cggug  cgcgucca cc g
            ||    ||||||| ||| ||||| |||| |||||  |||||||| ||  
3'          cc    ccgcggc gug cucgg gacc gccgc  gcgcgggu gg a
   ----cgugg  aaaa       a   c     c    u     -c        u  g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr4: 46382362-46382471 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018691

Mature sequence sbi-miR5384

• Accession: MIMAT0021682
• Sequence: 67 - cgcgccgccguccagcgg - 84
• Evidence: experimental; SOLiD [1]

References

1. PMID:21740560 "Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems" Calvino M, Bruggmann R, Messing J BMC Genomics. 12:356(2011).