Stem-loop sequence mtr-MIR171h

Accession

MI0018372 (change log)

Description

Medicago truncatula miR171h stem-loop

Gene family

MIPF0000104; MIR171_2

Literature search

9 open access papers mention mtr-MIR171h
(198 sentences)

Stem-loop

   aa  ag  a            u   u    a      uaaauaa   au     a 
5'   gu  ac ggagugguguug uuc gcuc ucuuau       uga  gaaug a
     ||  || |||||||||||| ||| |||| ||||||       |||  ||||| u
3'   ca  ug ccucacuauaac aag cgag agaaua       auu  uuuac g
   uc  ca  a            u   c    c      ----uuc   cg     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 31404708-31404816 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR171h

• mtr-MIR171g: chr3: 31404873-31405008 [-]
• mtr-MIR171h: chr3: 31404708-31404816 [-]

Database links

• miRBase Tracker:MI0018372

Mature sequence mtr-miR171h

• Accession: MIMAT0021269
• Sequence: 79 - cgagccgaaucaauaucacuc - 99
• Evidence: experimental; Illumina [1-2]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).
2. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).