Stem-loop mtr-MIR5213

Accession

MI0018253

Description

Medicago truncatula mtr-MIR5213 precursor miRNA

Literature search

1 open access papers mention mtr-MIR5213
(2 sentences)

Sequence

uagugaaauugaUACGUGUGUCUUCACCUCUGAAcuaucaauauuauguuucaaaucuuugauucgauucauucuuuugcuuCAGAGUGCAGAUACACGCAUCucuuuuccua
(((.((((..(((.(((((((((.(((.((((((....(((....(((..((.((((...)))).))..)))....))).))))))))).))))))))).)))...)))))))

Structure

   u    -uu   A         U   C      cuau   uauu   uu  a    u 
uag gaaa   gaU CGUGUGUCU CAC UCUGAA    caa    aug  uc aauc  
||| ||||   ||| ||||||||| ||| ||||||    |||    |||  || |||| u
auc cuuu   CUA GCACAUAGA GUG AGACuu    guu    uac  ag uuag  
   -    ucu   C         C   -      ---c   uucu   uu  c    u 

Annotation confidence Not enough data

Genome context

chr2: 18000286-18000398 [+]

Mature mtr-miR5213-5p

• Accession: MIMAT0021146
• Description: Medicago truncatula mtr-miR5213-5p mature miRNA
• Sequence: 13 - UACGUGUGUCUUCACCUCUGAA - 34
• Evidence: experimental ; Illumina [1-3]

Mature mtr-miR5213-3p

• Accession: MIMAT0021147
• Description: Medicago truncatula mtr-miR5213-3p mature miRNA
• Sequence: 83 - CAGAGUGCAGAUACACGCAUC - 103
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553