Stem-loop sequence bdi-MIR169f

Accession

MI0018160 (change log)

Description

Brachypodium distachyon miR169f stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

3 open access papers mention bdi-MIR169f
(29 sentences)

Stem-loop

   -    c     g  c a    c        a  c          gacuugccggccggcuggccggcaaugucgc 
5'  gggc augca ga g ggca agagcagg ug agccaaggau                               c
    |||| ||||| || | |||| |||||||| || ||||||||||                               g
3'  cccg ugugu cu c ccgu ucucguuc ac ucgguuccug                               c
   u    u     a  a -    c        c  a          uuugaacggcccguucguaguacagugcggc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 16738806-16738956 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR169f

• bdi-MIR169f: 3: 16738806-16738956 [+]
• bdi-MIR7748b: 3: 16741357-16741575 [-]

Database links

• miRBase Tracker:MI0018160

Mature sequence bdi-miR169f

• Accession: MIMAT0020736
• Sequence: 33 - cagccaaggaugacuugccgg - 53
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).