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Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs |
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|---|---|
| PubMed ID | 21371551 |
| Authors | "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G" |
| Journal | "Genomics |
| Volume | 97 |
| Pages | 282-293 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| bdi-MIR167a | MI0011561 | None | 1 | 6349045 | 6349135 | + | - |
| bdi-MIR397a | MI0011565 | None | 3 | 3149697 | 3149820 | - | - |
| bdi-MIR166a | MI0011570 | None | 1 | 6574374 | 6574493 | + | - |
| bdi-MIR169b | MI0011574 | None | 1 | 27159120 | 27159225 | - | - |
| bdi-MIR1878 | MI0017956 | None | 4 | 37301958 | 37302055 | + | - |
| bdi-MIR169d | MI0018079 | None | 4 | 26242409 | 26242595 | + | - |
| bdi-MIR169i | MI0018080 | None | 4 | 44509037 | 44509211 | + | - |
| bdi-MIR395a | MI0018081 | None | 4 | 16374432 | 16374612 | + | - |
| bdi-MIR169j | MI0018082 | None | 4 | 44513754 | 44513936 | + | - |
| bdi-MIR166f | MI0018083 | None | 4 | 6090867 | 6091011 | - | - |
| bdi-MIR171b | MI0018084 | None | 1 | 6911133 | 6911296 | + | - |
| bdi-MIR390a | MI0018085 | None | 1 | 2722067 | 2722275 | + | - |
| bdi-MIR160a | MI0018086 | None | 1 | 4550703 | 4550877 | - | - |
| bdi-MIR528 | MI0018087 | None | 1 | 73059536 | 73059695 | - | - |
| bdi-MIR395b | MI0018088 | None | 1 | 55440558 | 55440678 | - | - |
| bdi-MIR166d | MI0018089 | None | 1 | 71419377 | 71419541 | - | - |
| bdi-MIR167b | MI0018091 | None | 1 | 3770002 | 3770191 | + | - |
| bdi-MIR166b | MI0018092 | None | 1 | 30655617 | 30655860 | - | - |
| bdi-MIR160b | MI0018093 | None | 1 | 28020411 | 28020556 | - | - |
| bdi-MIR164b | MI0018094 | None | 1 | 14544140 | 14544348 | + | - |
| bdi-MIR167c | MI0018095 | None | 1 | 54067075 | 54067233 | + | - |
| bdi-MIR396d | MI0018096 | None | 1 | 46677004 | 46677155 | - | - |
| bdi-MIR169k | MI0018097 | None | 1 | 1175425 | 1175598 | + | - |
| bdi-MIR168 | MI0018098 | None | 3 | 1774700 | 1774835 | - | - |
| bdi-MIR160c | MI0018100 | None | 3 | 3414575 | 3414722 | - | - |
| bdi-MIR396c | MI0018101 | None | 3 | 54968138 | 54968290 | - | - |
| bdi-MIR167d | MI0018102 | None | 3 | 3632405 | 3632608 | - | - |
| bdi-MIR399b | MI0018103 | None | 3 | 7135266 | 7135425 | + | - |
| bdi-MIR156b | MI0018104 | None | 3 | 39258110 | 39258314 | - | - |
| bdi-MIR169g | MI0018105 | None | 3 | 43444486 | 43444666 | + | - |
| bdi-MIR160d | MI0018106 | None | 3 | 12734293 | 12734442 | + | - |
| bdi-MIR160e | MI0018107 | None | 3 | 41554285 | 41554428 | + | - |
| bdi-MIR396e | MI0018108 | None | 3 | 54962836 | 54963036 | + | - |
| bdi-MIR156c | MI0018109 | None | 3 | 4336022 | 4336167 | - | - |
| bdi-MIR172a | MI0018110 | None | 3 | 55737301 | 55737453 | - | - |
| bdi-MIR396a | MI0018111 | None | 3 | 59349783 | 59349991 | - | - |
| bdi-MIR166e | MI0018112 | None | 3 | 51437868 | 51438018 | + | - |
| bdi-MIR166c | MI0018113 | None | 3 | 33098767 | 33098938 | + | - |
| bdi-MIR169e | MI0018114 | None | 3 | 43441526 | 43441689 | + | - |
| bdi-MIR394 | MI0018115 | None | 3 | 52316372 | 52316571 | - | - |
| bdi-MIR398a | MI0018116 | None | 2 | 35924413 | 35924562 | - | - |
| bdi-MIR159a | MI0018117 | None | 2 | 5602219 | 5602452 | + | - |
| bdi-MIR164a | MI0018118 | None | 2 | 19949322 | 19949514 | - | - |
| bdi-MIR393a | MI0018119 | None | 2 | 2001005 | 2001163 | - | - |
| bdi-MIR172b | MI0018121 | None | 2 | 58915755 | 58916008 | - | - |
| bdi-MIR156d | MI0018122 | None | 5 | 18202182 | 18202332 | - | - |
| bdi-MIR393b | MI0018123 | None | 5 | 27613816 | 27613989 | + | - |
| bdi-MIR169h | MI0018124 | None | 5 | 11563834 | 11563997 | - | - |
| bdi-MIR396b | MI0018125 | None | 5 | 27112463 | 27112651 | + | - |
| bdi-MIR169c | MI0018126 | None | 5 | 23763870 | 23764020 | - | - |
| bdi-MIR395c | MI0018127 | None | 5 | 25455997 | 25456122 | + | - |
| bdi-MIR827 | MI0018128 | None | 5 | 18037481 | 18037644 | - | - |
| bdi-MIR5163a | MI0018129 | None | 4 | 11947824 | 11948009 | - | - |
| bdi-MIR5181b | MI0018130 | None | 4 | 7045106 | 7045256 | + | - |
| bdi-MIR5164 | MI0018131 | None | 4 | 22543862 | 22544027 | - | - |
| bdi-MIR5165 | MI0018132 | None | 4 | 33186148 | 33186396 | - | - |
| bdi-MIR5166 | MI0018133 | None | 4 | 14440355 | 14440694 | + | - |
| bdi-MIR5167a | MI0018134 | None | 4 | 42126781 | 42127074 | - | - |
| bdi-MIR166g | MI0018135 | None | 4 | 37627843 | 37628050 | + | - |
| bdi-MIR5169a | MI0018136 | None | 4 | 42248170 | 42248379 | - | - |
| bdi-MIR319a | MI0018137 | None | 4 | 31253293 | 31253572 | + | - |
| bdi-MIR5180b | MI0018138 | None | 4 | 5647864 | 5647998 | - | - |
| bdi-MIR5170 | MI0018139 | None | 1 | 56853936 | 56854310 | - | - |
| bdi-MIR5171a | MI0018140 | None | 1 | 46051254 | 46051407 | - | - |
| bdi-MIR5172 | MI0018141 | None | 1 | 44311568 | 44311956 | + | - |
| bdi-MIR5173 | MI0018142 | None | 1 | 22135899 | 22136079 | - | - |
| bdi-MIR5174a | MI0018143 | None | 1 | 45787966 | 45788131 | - | - |
| bdi-MIR5175a | MI0018144 | None | 1 | 15325058 | 15325194 | + | - |
| bdi-MIR5176 | MI0018145 | None | 1 | 28306160 | 28306307 | - | - |
| bdi-MIR5175b | MI0018146 | None | 3 | 19465406 | 19465546 | + | - |
| bdi-MIR395d | MI0018147 | None | 3 | 14764296 | 14764443 | - | - |
| bdi-MIR5177 | MI0018148 | None | 3 | 9879796 | 9880206 | + | - |
| bdi-MIR5178 | MI0018149 | None | 3 | 8463664 | 8463877 | - | - |
| bdi-MIR398b | MI0018150 | None | 3 | 21918225 | 21918387 | + | - |
| bdi-MIR5179 | MI0018151 | None | 3 | 9493263 | 9493513 | - | - |
| bdi-MIR164c | MI0018152 | None | 3 | 59107074 | 59107211 | - | - |
| bdi-MIR5180a | MI0018153 | None | 3 | 56704432 | 56704571 | + | - |
| bdi-MIR5181a | MI0018154 | None | 2 | 48358975 | 48359115 | + | - |
| bdi-MIR5182 | MI0018155 | None | 2 | 51090546 | 51090760 | - | - |
| bdi-MIR5183 | MI0018156 | None | 2 | 46665653 | 46665804 | - | - |
| bdi-MIR5184 | MI0018157 | None | 2 | 47213136 | 47213398 | - | - |
| bdi-MIR5185a | MI0018158 | None | 2 | 41735710 | 41735862 | + | - |
| bdi-MIR5185b | MI0018159 | None | 5 | 6094953 | 6095105 | + | - |
| bdi-MIR169f | MI0018160 | None | 3 | 16738806 | 16738956 | + | - |
| bdi-MIR408 | MI0017941 | None | None | None | - | ||
| bdi-MIR171d | MI0018090 | None | None | None | - | ||
| bdi-MIR169a | MI0018120 | None | None | None | - | ||
| bdi-MIR397b | MI0018099 | None | 3 | 3177780 | 3177881 | - | - |