Stem-loop sequence bdi-MIR5181a

AccessionMI0018154 (change log)
DescriptionBrachypodium distachyon miR5181a stem-loop
Gene family MIPF0001200; MIR5067
Literature search

1 open access papers mention bdi-MIR5181a
(2 sentences)

Stem-loop 
   ------gca   c   -cu       aug                           a  a               
5'          ugc aag   auguuuu   uacuccuucugauccauaauaaguguc gg auuuaguacaaagu 
            ||| |||   |||||||   ||||||||||||||||||||||||||| || ||||||||||||| u
3'          aug uuc   uauaaaa   augagggagacuagguauuauucacgg cc uaaaucauguuuca 
   cccuaaauc   u   aau       -ga                           c  c
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Bd21; GCA_000005505.1) Overlapping transcripts
2: 48358975-48359115 [+]
intergenic
Database links

Mature sequence bdi-miR5181a-5p

Accession MIMAT0020730
Sequence

32 -  

ugauccauaauaagugucagg

 - 52

Get sequence
Evidence experimental; Illumina [2]

Mature sequence bdi-miR5181a-3p

Accession MIMAT0027085
Sequence

86 -  

cggcacuuauuauggaucaga

 - 106

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2
PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).