Stem-loop sequence bdi-MIR395d

Accession

MI0018147 (change log)

Description

Brachypodium distachyon miR395d stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395d
(33 sentences)

Stem-loop

   -   ------u   g  cg  -c   u       u            uc           g agg       uccuaua 
5'  agc       ccu ga  aa  ggu gguuguu ccugggguuccc  caaacacuuca c   ucggcuu       c
    |||       ||| ||  ||  ||| ||||||| ||||||||||||  ||||||||||| |   |||||||        
3'  ucg       gga cu  uu  ccg ccaacag ggaucucaaggg  guuugugaagu g   agucgga       u
   g   ucaaacu   a  au  ua   -       u            --           g -ga       cacucga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 14764296-14764443 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018147

Mature sequence bdi-miR395d-5p

• Accession: MIMAT0027082
• Sequence: 30 - ugggguucccuccaaacacuuca - 52
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR395d-3p

• Accession: MIMAT0020723
• Sequence: 94 - aaguguuuggggaacucuagg - 114
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).