Stem-loop sequence bdi-MIR5174a

Accession

MI0018143 (change log)

Previous IDs

bdi-MIR5174

Description

Brachypodium distachyon miR5174 stem-loop

Gene family

MIPF0001200; MIR5067

Literature search

1 open access papers mention bdi-MIR5174a
(3 sentences)

Stem-loop

   ------------------------------caaguuuauuaaaauucauagaucu    ua       c                a          g 
5'                                                        uacu  cuccguu cauaaagauuggcgug auuugaacua a
                                                          ||||  ||||||| |||||||||||||||| ||||||||||  
3'                                                        auga  gaggcaa guauuucuaaccgugc uaaauuugau g
   ucgagaugcagcugagcuagaacguuuuagacgguucaguacugacugagacaac    gg       a                c          c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 1: 45787966-45788131 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018143

Mature sequence bdi-miR5174a

• Accession: MIMAT0020718
• Previous IDs: bdi-miR5174
• Sequence: 32 - cuccguuccauaaagauuggc - 52
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).