Stem-loop bdi-MIR5174a

Accession

MI0018143

Description

Brachypodium distachyon bdi-MIR5174a precursor miRNA

Gene family

MIPF0001200; MIR5067

Literature search

1 open access papers mention bdi-MIR5174a
(3 sentences)

Sequence

caaguuuauuaaaauucauagaucuuacuuaCUCCGUUCCAUAAAGAUUGGCgugaauuugaacuagagcuaguuuaaauccgugccaaucuuuaugaaacggagggaguacaacagagucagucaugacuuggcagauuuugcaagaucgagucgacguagagcu
..(((((......((((...(((((((((..(((((((.((((((((((((((((.((((((((((....)))))))))).)))))))))))))))).)))))))..))))...(((((((.((((.....)))).)))))))..))))))))).......)))))

Structure

ca     -auuaaa    aua     ----------------------------------    ua       C                a          g 
  aguuu       auuc   gaucu                                  uacu  CUCCGUU CAUAAAGAUUGGCgug auuugaacua a
  |||||       ||||   |||||                                  ||||  ||||||| |||||||||||||||| ||||||||||  
  ucgag       ugag   cuaga                                  auga  gaggcaa guauuucuaaccgugc uaaauuugau g
--     augcagc    ---     acguuuuagacgguucaguacugacugagacaac    gg       a                c          c 

Annotation confidence Not enough data

Genome context

1: 45787966-45788131 [-]

Mature bdi-miR5174a

• Accession: MIMAT0020718
• Description: Brachypodium distachyon bdi-miR5174a mature miRNA
• Sequence: 32 - CUCCGUUCCAUAAAGAUUGGC - 52
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293