Stem-loop sequence bdi-MIR166g

Accession

MI0018135 (change log)

Previous IDs

bdi-MIR5168

Description

Brachypodium distachyon miR166g stem-loop

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166g
(18 sentences)

Stem-loop

   ---c    u  - cag  u  a   a              uu         a     u     uacaucauguacauggagggcaugcaugcaugauaugcuguu 
5'     ugca gu c   gu ga guu gguuaaggggguug  gucugguuc agguc ccaca                                          g
       |||| || |   || || ||| ||||||||||||||  ||||||||| ||||| |||||                                          u
3'     acgu ca g   cg cu cga ccaauuucccuagc  cggaccagg ucuag ggugu                                          u
   cucc    u  u aca  u  a   -              uu         c     u     aguaugugacguauauauguguucuagcucguuuaccgugag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 4: 37627843-37628050 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018135

Mature sequence bdi-miR166g-5p

• Accession: MIMAT0027079
• Sequence: 40 - ucugguucaaggucuccacau - 60
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR166g-3p

• Accession: MIMAT0020710
• Previous IDs: bdi-miR5168
• Sequence: 147 - uguggugaucucggaccaggc - 167
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).