Stem-loop bdi-MIR166g

Accession

MI0018135

Description

Brachypodium distachyon bdi-MIR166g precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166g
(18 sentences)

Sequence

cugcauguccagguugaaguuagguuaaggggguuguugUCUGGUUCAAGGUCUCCACAUacaucauguacauggagggcaugcaugcaugauaugcuguuguugagugccauuugcucgaucuuguguauauaugcaguguaugaUGUGGUGAUCUCGGACCAGGCuucgaucccuuuaaccagcaucugcacaguacuugcaccuc
.((((.(((...((.((.(((.((((((((((((((..(((((((((.(((((.((((((.(.((((....)))).)..((((((((((((((((((....(((((((.......)))))))...)))))).)))))).)))))))))))).))))).)))))))))..))))))))))))))))).)).))...).)).))))....

Structure

---c    u  - cag  u  a   a              uu         A     U      acaucauguacauggaggg      -      -      uguu       gc 
    ugca gu c   gu ga guu gguuaaggggguug  gUCUGGUUC AGGUC CCACAU                   caugca ugcaug auaugc    guugagu  c
    |||| || |   || || ||| ||||||||||||||  ||||||||| ||||| ||||||                   |||||| |||||| ||||||    |||||||  a
    acgu ca g   cg cu cga ccaauuucccuagc  CGGACCAGG UCUAG GGUGUa                   guaugu acguau uaugug    uagcucg  u
cucc    u  u aca  u  a   -              uu         C     U      -------------------      g      a      -uuc       uu 

Annotation confidence Not enough data

Genome context

4: 37627843-37628050 [+]

Mature bdi-miR166g-3p

• Accession: MIMAT0020710
• Description: Brachypodium distachyon bdi-miR166g-3p mature miRNA
• Sequence: 147 - UGUGGUGAUCUCGGACCAGGC - 167
• Evidence: experimental ; Illumina [2]

Mature bdi-miR166g-5p

• Accession: MIMAT0027079
• Description: Brachypodium distachyon bdi-miR166g-5p mature miRNA
• Sequence: 40 - UCUGGUUCAAGGUCUCCACAU - 60
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443