Stem-loop sequence bdi-MIR393b

AccessionMI0018123 (change log)
DescriptionBrachypodium distachyon miR393b stem-loop
Gene family MIPF0000083; MIR393
Literature search

2 open access papers mention bdi-MIR393b
(5 sentences)

Stem-loop 
   gcuggcaaauuaguguaagcuucaggaagcua  g     c           c          cau  gc      caag   ga   a 
5'                                 gu gagga uccaaagggau gcauugaucu   ca  ugcauc    cau  auc a
                                   || ||||| ||||||||||| ||||||||||   ||  ||||||    |||  |||  
3'                                 ca cucuu agguuucccua cgugacuaga   gu  acguag    gua  uag c
   -----cgcgcacuggcuggcuccgucuccgcu  g     a           a          -ac  au      cuag   gg   g
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Bd21; GCA_000005505.1) Overlapping transcripts
5: 27613816-27613989 [+]
intergenic
Database links

Mature sequence bdi-miR393b-5p

Accession MIMAT0020698
Sequence

42 -  

uccaaagggaucgcauugauc

 - 62

Get sequence
Evidence experimental; Illumina [2]

Mature sequence bdi-miR393b-3p

Accession MIMAT0027070
Sequence

120 -  

ucagugcaaucccuuuggaau

 - 140

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2
PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).