Stem-loop sequence bdi-MIR172a

Accession

MI0018110 (change log)

Description

Brachypodium distachyon miR172a stem-loop

Gene family

MIPF0000035; MIR172

Literature search

6 open access papers mention bdi-MIR172a
(17 sentences)

Stem-loop

   --a     ---cacgcac     -   c    a         c  c        a     -    ---    ag    aau 
5'    ggcgg          agucg gcg uugc ggugcagca ca caagauuc caucg gguu   cucc  ucgu   u
      |||||          ||||| ||| |||| ||||||||| || |||||||| ||||| ||||   ||||  ||||   a
3'    cugcu          ucagc cgc aacg cuacgucgu gu guucuaag guagu ccaa   gagg  agca   a
   uaa     auacuacuca     u   c    g         a  a        a     a    cau    --    auu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 55737301-55737453 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018110

Mature sequence bdi-miR172a-5p

• Accession: MIMAT0027061
• Sequence: 31 - gcagcaccaccaagauucaca - 51
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR172a-3p

• Accession: MIMAT0020685
• Sequence: 99 - agaaucuugaugaugcugcau - 119
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).