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miRBase |
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Stem-loop sequence bdi-MIR396e |
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Accession | MI0018108 (change log) | |||||
Description | Brachypodium distachyon miR396e stem-loop | |||||
Gene family | MIPF0000047; MIR396 | |||||
Literature search |
2 open access papers mention bdi-MIR396e | |||||
Stem-loop |
cuc ---aag -- ----- c a - ggacugcggccuguagcucucucgcccucuugau 5' gagc uaguu agucc augccauu cuuuccacagcuuucuuga cuucc cuuccc c |||| ||||| ||||| |||||||| ||||||||||||||||||| ||||| |||||| u 3' cuug guuag ucagg uacgguaa gaagggugucgaaagaacu ggagg gaaggg c -ua acuuaa uu accaa a g a acgagagggucgacgauggucaccucuagcugcc |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence bdi-miR396e-5p |
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Accession | MIMAT0020683 |
Sequence |
32 - uuccacagcuuucuugaacuu - 52 |
Evidence | experimental; Illumina [2] |
Mature sequence bdi-miR396e-3p |
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Accession | MIMAT0027060 |
Sequence |
143 - ggucaagaaagcugugggaag - 163 |
Evidence | experimental; Illumina [2] |
References |
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1 |
PMID:21371551
"Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
Genomics. 97:282-293(2011).
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2 |
PMID:23264558
"Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon"
Mol Plant. 6:423-443(2013).
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