Stem-loop bdi-MIR396e

Accession

MI0018108

Description

Brachypodium distachyon bdi-MIR396e precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

2 open access papers mention bdi-MIR396e
(4 sentences)

Sequence

cucgagcaaguaguuaguccaugccauuccuUUCCACAGCUUUCUUGAACUUcccuucccggacugcggccuguagcucucucgcccucuugaucucccgucgaucuccacugguagcagcugggagagcagggaagaggagGGUCAAGAAAGCUGUGGGAAGaaauggcauaaccaggacuuugauugaauucaguucau
...((((...((((((((((((((((((.(((((((((((((((((((.(((((((((((((.(....)))....((((((((((((....((((.......))))......)).....)).)))))))).)))))).))))).))))))))))))))))))).)))))))).....)))))..)))))......))))..

Structure

cuc    ---aag     --     -----        c                   A     -      ggacugcggccugua        -  -----  --ucuu    uc 
   gagc      uaguu  agucc     augccauu cuUUCCACAGCUUUCUUGA CUUcc cuuccc               gcucucuc gc     cc      gauc  c
   ||||      |||||  |||||     |||||||| ||||||||||||||||||| ||||| ||||||               |||||||| ||     ||      ||||  c
   cuug      guuag  ucagg     uacgguaa GAAGGGUGUCGAAAGAACU Ggagg gaaggg               cgagaggg cg     gg      cuag  g
-ua    acuuaa     uu     accaa        a                   G     a      --------------a        u  acgau  ucaccu    cu 

Annotation confidence Not enough data

Genome context

3: 54962836-54963036 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR396e

Mature bdi-miR396e-5p

• Accession: MIMAT0020683
• Description: Brachypodium distachyon bdi-miR396e-5p mature miRNA
• Sequence: 32 - UUCCACAGCUUUCUUGAACUU - 52
• Evidence: experimental ; Illumina [2]

Mature bdi-miR396e-3p

• Accession: MIMAT0027060
• Description: Brachypodium distachyon bdi-miR396e-3p mature miRNA
• Sequence: 143 - GGUCAAGAAAGCUGUGGGAAG - 163
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443