Stem-loop sequence bdi-MIR169g

Accession

MI0018105 (change log)

Description

Brachypodium distachyon miR169g stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

3 open access papers mention bdi-MIR169g
(27 sentences)

Stem-loop

   gguguugcgugggcagagaagaagccuuacauggca       g uuau   -uga          u    u       -uca   uu   -      -   ac 
5'                                     gcaaggg c    cuc    uagccaagga gacu gccugug    uac  caa ggcuug gca  a
                                       ||||||| |    |||    |||||||||| |||| |||||||    |||  ||| |||||| |||   
3'                                     cguucuc g    gag    aucgguuccu cuga cggauac    aug  guu ccgagu cgu  u
   --------------------gucggaccguacucgg       g ---u   uccg          -    -       ucug   uu   u      a   ag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 43444486-43444666 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR169g

• bdi-MIR169e: 3: 43441526-43441689 [+]
• bdi-MIR169g: 3: 43444486-43444666 [+]

Database links

• miRBase Tracker:MI0018105

Mature sequence bdi-miR169g

• Accession: MIMAT0020680
• Sequence: 56 - uagccaaggaugacuugccug - 76
• Evidence: not experimental

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).