Stem-loop sequence bdi-MIR156b

Accession

MI0018104 (change log)

Description

Brachypodium distachyon miR156b stem-loop

Gene family

MIPF0000008; MIR156

Literature search

5 open access papers mention bdi-MIR156b
(27 sentences)

Stem-loop

   guguugu   a    u   aa   ua  ---------         -     -        a       c  acu     u    --c    --gcg  g --a  c      gc 
5'        ggc ggug ggc  ggc  ug         ggugacaga agaga gugagcac cagcggc ag   gcauc auuc   uucg     gc g   ca ggccgg  a
          ||| |||| |||  |||  ||         ||||||||| ||||| |||||||| ||||||| ||   ||||| ||||   ||||     || |   || ||||||   
3'        ccg ccgc ccg  ucg  ac         ccacugucu ucucu cacucgug gucgucg uc   cguag uaag   aagc     cg u   gu ccggcc  u
   -----cu   a    -   -a   gc  acacgcucu         c     u        c       -  -gu     -    caa    acaua  g acg  a      gg 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 39258110-39258314 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018104

Mature sequence bdi-miR156b-5p

• Accession: MIMAT0020679
• Sequence: 31 - ugacagaagagagugagcac - 50
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR156b-3p

• Accession: MIMAT0027057
• Sequence: 154 - gcucacuucucucucugucacc - 175
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).