Stem-loop sequence bdi-MIR169k

AccessionMI0018097 (change log)
DescriptionBrachypodium distachyon miR169k stem-loop
Gene family MIPF0000012; MIR169_1
Literature search

3 open access papers mention bdi-MIR169k
(27 sentences)

Stem-loop 
   ucuuu        -----        ccau   u a      a  a             a    ga    c      -    ----      gu 
5'      gcauggaa     guaggagg    cuu g uagcca gg ugauuugccugua aacc  uugu gucgcc ucuc    ggugcc  u
        ||||||||     ||||||||    ||| | |||||| || ||||||||||||| ||||  |||| |||||| ||||    ||||||   
3'      cguaccuu     cauucucc    gag c aucggu cc acugaacggguau uugg  aacg cggcgg aggg    ucacgg  c
   ---ac        auacc        --au   c c      -  g             c    ac    a      g    aagc      ac
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Bd21; GCA_000005505.1) Overlapping transcripts
1: 1175425-1175598 [+]
intergenic
Database links

Mature sequence bdi-miR169k-5p

Accession MIMAT0020672
Sequence

32 -  

uagccaaggaugauuugccugu

 - 53

Get sequence
Evidence experimental; Illumina [2]

Mature sequence bdi-miR169k-3p

Accession MIMAT0027052
Sequence

125 -  

gggcaagucagccuggcuacc

 - 145

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2
PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).