Stem-loop bdi-MIR166d

Accession

MI0018089

Description

Brachypodium distachyon bdi-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166d
(16 sentences)

Sequence

ucgcuggugcauguauggcgcaguugaggGGAAUGUUGUCUGGUUGGAGAccuagcuagcagcuagcacggaucauccauagaucgauucgacgcugcauaugcgcgcgguuUCGGACCAGGCUUCAUUCCCCccaacucucaacucgaucgaucuucuucgcuc
......((((.......))))(((((.((((((((..((((((((.((((((..(((((...))))).(((((((((....))).)))))).(((.((....))))).)))))).))))))))..)))))))).)))))........((.(((......))).))

Structure

-----ucgcuggugcauguauggcgc     a        UU        G      -uagcuagcagcuagca      -   c 
                          aguug ggGGAAUG  GUCUGGUU GAGAcc                 cggauc auc a
                          ||||| ||||||||  |||||||| ||||||                 |||||| |||  
                          ucaac CCCCUUAC  CGGACCAG CUuugg                 gcuuag uag u
cucgcuucuucuagcuagcucaacuc     c        UU        G      cgcgcguauacgucgca      c   a 

Annotation confidence Not enough data

Genome context

1: 71419377-71419541 [-]

Mature bdi-miR166d-3p

• Accession: MIMAT0020664
• Description: Brachypodium distachyon bdi-miR166d-3p mature miRNA
• Sequence: 113 - UCGGACCAGGCUUCAUUCCCC - 133
• Evidence: experimental ; Illumina [2]

Mature bdi-miR166d-5p

• Accession: MIMAT0027046
• Description: Brachypodium distachyon bdi-miR166d-5p mature miRNA
• Sequence: 30 - GGAAUGUUGUCUGGUUGGAGA - 50
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443