Stem-loop bdi-MIR528

Accession

MI0018087

Description

Brachypodium distachyon bdi-MIR528 precursor miRNA

Gene family

MIPF0000868; MIR528

Literature search

2 open access papers mention bdi-MIR528
(5 sentences)

Sequence

uuugggguugggauugggggcuggagcagcagcggUGGAAGGGGCAUGCAGAGGAGcagggaugaugggggguuguacucugcuucuuccccucucguucuCCUGUGCCUGCCUCUUCCAUUccugcugcuaccgccgugcucggugggcagggcugggc
................(.(((.((((((((((.(((((((((((((.(((.(((((.((.((.((.((((((..(((...)))..)))))).)))).))))))).))).))))))))))))).)))))))).))))).)(((((((.......)))))))

Structure

-----uuugggguugggauug g   u  -        c             U   G     c  g  u  u      uu   c 
                     g ggc gg agcagcag ggUGGAAGGGGCA GCA AGGAG ag ga ga gggggg  gua  
                     | ||| || |||||||| ||||||||||||| ||| ||||| || || || ||||||  ||| u
                     u ccg cc ucgucguc UUACCUUCUCCGU CGU UCCuc uu cu cu cccuuc  cgu  
cgggucgggacggguggcucg g   -  a        c             C   G     -  g  -  c      uu   c 

Annotation confidence Not enough data

Genome context

1: 73059536-73059695 [-]

Mature bdi-miR528-5p

• Accession: MIMAT0020662
• Description: Brachypodium distachyon bdi-miR528-5p mature miRNA
• Sequence: 36 - UGGAAGGGGCAUGCAGAGGAG - 56
• Evidence: experimental ; Illumina [1,3]

Mature bdi-miR528-3p

• Accession: MIMAT0027045
• Description: Brachypodium distachyon bdi-miR528-3p mature miRNA
• Sequence: 102 - CCUGUGCCUGCCUCUUCCAUU - 122
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443