Stem-loop sequence bdi-MIR390a

Accession

MI0018085 (change log)

Previous IDs

bdi-MIR390

Description

Brachypodium distachyon miR390 stem-loop

Gene family

MIPF0000101; MIR390

Literature search

3 open access papers mention bdi-MIR390a
(37 sentences)

Stem-loop

   ccaaucgagauc      ---    aau  u  a         g         cuagguucacugcaaccaacaagagaaccggccaucgauauauacauauaua 
5'             gguaag   gaac   cc ug agcucagga ggauagcgc                                                    u
               ||||||   ||||   || || ||||||||| |||||||||                                                    g
3'             ccauuc   cuug   gg ac ucgaguccu ucuaucgcg                                                    u
   -acacacccgua      uug    cuu  c  c         a         aagccugcuugucuagcugccuuggucguucucuagcuagccagcuagcucc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 1: 2722067-2722275 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018085

Mature sequence bdi-miR390a-5p

• Accession: MIMAT0020660
• Previous IDs: bdi-miR390
• Sequence: 31 - aagcucaggagggauagcgcc - 51
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR390a-3p

• Accession: MIMAT0027043
• Sequence: 159 - cgcuaucuauccugagcucca - 179
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).