Stem-loop sequence bdi-MIR169j

Accession

MI0018082 (change log)

Description

Brachypodium distachyon miR169j stem-loop

Gene family

MIPF0000832; MIR169_5

Literature search

3 open access papers mention bdi-MIR169j
(27 sentences)

Stem-loop

   ---    -     -a   a      cuac    g    c      u      c   c   ca   uu   g        ---c      aaaacuaa 
5'    cuua caugg  gau aggagc    cucu uuag caggaa ggcuug cua gca  cau  uuc guucauca    aggggc        c
      |||| |||||  ||| ||||||    |||| |||| |||||| |||||| ||| |||  |||  ||| ||||||||    ||||||         
3'    ggau guacc  cua uccucg    gaga gauc guccuu ccgaac ggu cgu  gug  gag cagguagu    uccccg        u
   guc    c     cc   c      ---u    g    a      -      u   a   cg   -u   g        auga      auagaggu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 4: 44513754-44513936 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR169j

• bdi-MIR169i: 4: 44509037-44509211 [+]
• bdi-MIR169j: 4: 44513754-44513936 [+]

Database links

• miRBase Tracker:MI0018082

Mature sequence bdi-miR169j-5p

• Accession: MIMAT0020657
• Sequence: 31 - uagccaggaauggcuugccua - 51
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR169j-3p

• Accession: MIMAT0027042
• Sequence: 132 - uggucaagccuuccugacuagg - 153
• Evidence: experimental; Illumina [2]

References

1. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).