Stem-loop osa-MIR5157a

Accession

MI0018072

Description

Oryza sativa osa-MIR5157a precursor miRNA

Gene family

MIPF0001316; MIR5157

Sequence

1 reads, 0 reads per million, 1 experiments

gccuuaagAACUUUUUAAUAGCUACAACUUCUcucuuagaaucaacucuucuaagagAGAAGUUGUGGCUAUCAAAAAGUUccugaggcccua
((((((.(((((((((.((((((((((((((((((((((((.......)))))))))))))))))))))))).))))))))).))))))....

Structure

----      a         A                        uc 
    gccuua gAACUUUUU AUAGCUACAACUUCUcucuuagaa  a
    |||||| ||||||||| ||||||||||||||||||||||||  a
    cggagu cUUGAAAAA UAUCGGUGUUGAAGAgagaaucuu  c
aucc      c         C                        cu 

Annotation confidence Not enough data

Genome context

Chr8: 21476163-21476255 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5157a

Mature osa-miR5157a-5p

• Accession: MIMAT0021107
• Description: Oryza sativa osa-miR5157a-5p mature miRNA
• Sequence: 9 - AACUUUUUAAUAGCUACAACUUCU - 32
• Evidence: experimental ; Illumina [1]

Mature osa-miR5157a-3p

• Accession: MIMAT0021108
• Description: Oryza sativa osa-miR5157a-3p mature miRNA
• Sequence: 58 - AGAAGUUGUGGCUAUCAAAAAGUU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547