Stem-loop bdi-MIR5070

Accession

MI0017975

Description

Brachypodium distachyon bdi-MIR5070 precursor miRNA

Gene family

MIPF0002013; MIR5070

Literature search

1 open access papers mention bdi-MIR5070
(12 sentences)

Sequence

uccucaggguagccuuugacacugcuuaguucaaccaaaugaacuaaaauuuuaaaaugacacaacuuuuuggaaaacuaguucauuuguuugAACUAAGUAGGGUCAGAGGGUacccugaggg
.((((((((((.((((((((.(((((((((((((.(((((((((((...((((((((.(......).))))))))...))))))))))).))))))))))))).)))))))).)))))))))).

Structure

u          g        a             c           aaa        u ac 
 ccucagggua ccuuugac cugcuuaguucaa caaaugaacua   uuuuaaaa g  a
 |||||||||| |||||||| ||||||||||||| |||||||||||   |||||||| |   
 ggagucccaU GGAGACUG GAUGAAUCAAguu guuuacuugau   aagguuuu c  c
g          G        G             u           caa        u aa 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

2: 35045123-35045246 [+]

Mature bdi-miR5070

• Accession: MIMAT0020584
• Description: Brachypodium distachyon bdi-miR5070 mature miRNA
• Sequence: 94 - AACUAAGUAGGGUCAGAGGGU - 114
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129