Stem-loop bdi-MIR5058

Accession

MI0017948

Description

Brachypodium distachyon bdi-MIR5058 precursor miRNA

Sequence

guccaauuuaAACAGUUGAGGGAUGAAAAACAaaaaaaaaaucaaguugagggacauuuuuuuuuuaccuuucuccuaguuaauugaugaauauuugu
.....(((((..(((((((((((.((((...(((((((((((...(((....))))))))))))))...))))))))..))))))).)))))......

Structure

-gucca     AA       --    U    AAC           caa   g 
      auuua  CAGUUGA  GGGA GAAA   Aaaaaaaaaau   guu a
      |||||  |||||||  |||| ||||   |||||||||||   |||  
      uaagu  guuaauu  uccu cuuu   uuuuuuuuuua   cag g
uguuua     -a       ga    -    cca           ---   g 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

4: 31543610-31543707 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR5058

Mature bdi-miR5058

• Accession: MIMAT0020557
• Description: Brachypodium distachyon bdi-miR5058 mature miRNA
• Sequence: 11 - AACAGUUGAGGGAUGAAAAACA - 32
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129