miRBase entry: hvu-MIR5049a

Stem-loop hvu-MIR5049a


Accession
MI0017936
Description
Hordeum vulgare hvu-MIR5049a precursor miRNA
Gene family
MIPF0001200; MIR5067

Literature search
2 open access papers mention hvu-MIR5049a
(4 sentences)

Sequence

acucccucuguUCCUAAAUACUUGUUGUUGGGgagaacuagacuaguuuucugcaacaacaaguauugugguacggagggagu
(((((((((((.((..((((((((((((((.(((((((((...))))))))).))))))))))))))..)).)))))))))))

Structure
           U  UA              G         g 
acucccucugu CC  AAUACUUGUUGUUG Ggagaacua  
||||||||||| ||  |||||||||||||| ||||||||| a
ugagggaggca gg  uuaugaacaacaac ucuuuugau  
           u  ug              g         c 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature hvu-miR5049a

Accession MIMAT0020545
Description Hordeum vulgare hvu-miR5049a mature miRNA
Sequence 12 - UCCUAAAUACUUGUUGUUGGG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129