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miRBase |
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Stem-loop sequence hvu-MIR5048a |
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Accession | MI0017935 (change log) |
Previous IDs | hvu-MIR5048 |
Description | Hordeum vulgare miR5048 stem-loop |
Gene family | MIPF0001453; MIR5048 |
Literature search |
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5 open access papers mention hvu-MIR5048a |
Stem-loop |
u c ggu ggug u u --- u u u c u - uu cuuucaugagaaaugauugucccacaugcauauccaugacuaaaaaaagcaaaaaaguaauaauuggguguuguguucu 5' cuag aauauauuugca uuuaggucuaagu aaua cga cucu gaa aua uga aaccuu acaaauu gcu gauuauuu guagcgcu c |||| |||||||||||| ||||||||||||| |||| ||| |||| ||| ||| ||| |||||| ||||||| ||| |||||||| |||||||| 3' gauc uuauaugaacgu agauccagauuua uuau guu gaga cuu uau auu uuggaa uguuuaa uga cuaguaag uaucguga a g u -ac auug - - acg c u u - - a -u aauaguaauaccuaaguacguauuaguuucguaaguagaaggaaguguucaaaaacaauuugaaaagguagaaagaaac |
Confidence |
Annotation confidence: not enough data
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Database links |
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Mature sequence hvu-miR5048a |
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Accession | MIMAT0020544 |
Previous IDs | hvu-miR5048 |
Sequence |
11 - uauuugcagguuuuaggucuaa - 32 |
Evidence | experimental; Illumina [1] |
References |
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1 |
PMID:21352554
"Discovery of barley miRNAs through deep sequencing of short reads"
BMC Genomics. 12:129(2011).
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