Stem-loop sequence hsa-mir-5001

Accession

MI0017867 (change log)

Symbol

HGNC:MIR5001

Description

Homo sapiens miR-5001 stem-loop

Literature search

4 open access papers mention hsa-mir-5001
(9 sentences)

Stem-loop

   --agcuca      cug    g     -     uc  c         --   u 
5'         gggcgg   cgca agggc uggac  ag ggcggagcu  ggc g
           ||||||   |||| ||||| |||||  || |||||||||  ||| c
3'         cccgcc   gugu uccug accug  uc ccgucuuga  ccg u
   uccucucg      -ca    -     g     --  u         cu   g 

Deep sequencing

702 reads, 0 reads per million, 101 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 232550474-232550573 [-]
• Overlapping transcripts:

  intergenic

Database links

• HGNC:MIR5001
• RNAcentral:URS000075AC79_9606
• miRBase Tracker:MI0017867

Mature sequence hsa-miR-5001-5p

• Accession: MIMAT0021021
• Sequence: 21 - agggcuggacucagcggcggagcu - 44
• Deep sequencing: 480 reads, 62 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001F373E_9606
• Predicted targets:
  • TargetMiner:hsa-miR-5001-5p
  • TargetScanVert:hsa-miR-5001-5p
  • miRDB:hsa-miR-5001-5p

Mature sequence hsa-miR-5001-3p

• Accession: MIMAT0021022
• Sequence: 60 - uucugccucuguccagguccuu - 81
• Deep sequencing: 185 reads, 69 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000483D37_9606
• Predicted targets:
  • TargetMiner:hsa-miR-5001-3p
  • TargetScanVert:hsa-miR-5001-3p
  • miRDB:hsa-miR-5001-3p

References

1. PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).
2. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).