miRBase entry: cel-mir-4923a

Stem-loop cel-mir-4923a


Accession
MI0017709
Description
Caenorhabditis elegans cel-mir-4923a precursor miRNA


Sequence

23 reads, 1 reads per million, 5 experiments
guaagcaauugcuucucauuuucagaaauuguaugugaAAAAGAGAGCCUUUUGUUUACAG
((((((((..(.(((((.((((((.(.......).)))))).))))).)..))))))))..

Structure
--        uu c     a      g aa 
  guaagcaa  g uucuc uuuuca a  u
  ||||||||  | ||||| |||||| |  u
  CAUUUGUU  C GAGAG AAAagu u  g
GA        UU C     A      g au 


Annotation confidence Not enough data
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Genome context
chrX: 1879876-1879936 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from cel-mir-4923a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-4923a

Accession MIMAT0020129
Description Caenorhabditis elegans cel-miR-4923a mature miRNA
Sequence 39 - AAAAGAGAGCCUUUUGUUUACAG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21177960
    Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
    "Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC"
    "Genome Res (2011) 21:286-300