Stem-loop sequence hsa-mir-4787

Accession

MI0017434 (change log)

Symbol

HGNC:MIR4787

Description

Homo sapiens miR-4787 stem-loop

Literature search

3 open access papers mention hsa-mir-4787
(3 sentences)

Stem-loop

        c  ac      -     ----       g      gg  g 
5' cgguc ag  guggcg ggggu    ggcggcg cauccc  ac g
   ||||| ||  |||||| |||||    ||||||| ||||||  || c
3' gccag uc  cgccgc ccccg    ccgccgc guaggg  ug c
        -  --      g     ucac       -      ag  u 

Deep sequencing

1669 reads, 4.46 reads per million, 112 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr3: 50675080-50675163 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000346241 ; MAPKAPK3-006; intron 1

  OTTHUMT00000346240 ; MAPKAPK3-005; intron 2

  OTTHUMT00000346236 ; MAPKAPK3-001; intron 2

  OTTHUMT00000346237 ; MAPKAPK3-002; intron 4

  ENST00000457064 ; MAPKAPK3-006; intron 1

  ENST00000430409 ; MAPKAPK3-005; intron 2

  ENST00000357955 ; MAPKAPK3-001; intron 2

  ENST00000446044 ; MAPKAPK3-002; intron 4

Database links

• EntrezGene:MIR4787
• HGNC:MIR4787
• RNAcentral:URS000075A45B_9606
• miRBase Tracker:MI0017434

Mature sequence hsa-miR-4787-5p

• Accession: MIMAT0019956
• Sequence: 14 - gcggggguggcggcggcauccc - 35
• Deep sequencing: 261 reads, 72 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000521832_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4787-5p
  • TargetScanVert:hsa-miR-4787-5p
  • miRDB:hsa-miR-4787-5p

Mature sequence hsa-miR-4787-3p

• Accession: MIMAT0019957
• Sequence: 51 - gaugcgccgcccacugccccgcgc - 74
• Deep sequencing: 1406 reads, 92 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002CBC6D_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4787-3p
  • TargetScanVert:hsa-miR-4787-3p
  • miRDB:hsa-miR-4787-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).
2. PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).