Stem-loop sequence hsa-mir-3064

Accession

MI0017375 (change log)

Symbol

HGNC:MIR3064

Description

Homo sapiens miR-3064 stem-loop

Gene family

MIPF0001238; mir-3064

Literature search

7 open access papers mention hsa-mir-3064
(82 sentences)

Stem-loop

   -g  cu  c     ug     -     cuc  u 
5'   gu  gg uguug  gugug caaaa   cg a
     ||  || |||||  ||||| |||||   || c
3'   ca  cc acaac  cacac guuuu   gu a
   ga  uu  -     gu     c     auc  u 

Deep sequencing

641 reads, 0 reads per million, 121 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr17: 64500774-64500839 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000446950 ; PRKCA-001; intron 3

  OTTHUMT00000446976 ; PRKCA-002; intron 3

  OTTHUMT00000446977 ; PRKCA-003; intron 3

  ENST00000578063 ; PRKCA-001; intron 3

  ENST00000413366 ; PRKCA-002; intron 3

  ENST00000284384 ; PRKCA-003; intron 3

Clustered miRNAs

< 10kb from hsa-mir-3064

• hsa-mir-5047: chr17: 64501214-64501313 [-]
• hsa-mir-3064: chr17: 64500774-64500839 [-]

Database links

• EntrezGene:MIR3064
• HGNC:MIR3064
• miRBase Tracker:MI0017375

Mature sequence hsa-miR-3064-5p

• Accession: MIMAT0019864
• Sequence: 3 - ucuggcuguuguggugugcaa - 23
• Deep sequencing: 462 reads, 99 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-3064-5p
  • TargetScanVert:hsa-miR-3064-5p
  • miRDB:hsa-miR-3064-5p

Mature sequence hsa-miR-3064-3p

• Accession: MIMAT0019865
• Sequence: 43 - uugccacacugcaacaccuuaca - 65
• Deep sequencing: 175 reads, 72 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-3064-3p
  • TargetScanVert:hsa-miR-3064-3p
  • miRDB:hsa-miR-3064-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).