Stem-loop sequence hsa-mir-4687

Accession

MI0017319 (change log)

Symbol

HGNC:MIR4687

Description

Homo sapiens miR-4687 stem-loop

Literature search

3 open access papers mention hsa-mir-4687
(3 sentences)

Stem-loop

        ag     a    u     c   c     cu g  g 
5' accug  gagcc gccc ccucc gca ccaaa  u ga c
   |||||  ||||| |||| ||||| ||| |||||  | ||  
3' ugggc  cucgg cggg ggagg ugu gguuu  a uu a
        -g     a    -     u   c     cc g  c 

Deep sequencing

159 reads, 5.41 reads per million, 74 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 3856062-3856141 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000034125 ; RHOG-001; intron 1

  OTTHUMT00000034127 ; RHOG-003; intron 1

  OTTHUMT00000034126 ; RHOG-002; intron 1

  ENST00000351018 ; RHOG-001; intron 1

  ENST00000396979 ; RHOG-003; intron 1

  ENST00000396978 ; RHOG-002; intron 1

Database links

• EntrezGene:MIR4687
• HGNC:MIR4687
• miRBase Tracker:MI0017319

Mature sequence hsa-miR-4687-5p

• Accession: MIMAT0019774
• Sequence: 12 - cagcccuccucccgcacccaaa - 33
• Deep sequencing: 70 reads, 46 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4687-5p
  • TargetScanVert:hsa-miR-4687-5p
  • miRDB:hsa-miR-4687-5p

Mature sequence hsa-miR-4687-3p

• Accession: MIMAT0019775
• Sequence: 52 - uggcuguuggagggggcaggc - 72
• Deep sequencing: 89 reads, 47 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4687-3p
  • TargetScanVert:hsa-miR-4687-3p
  • miRDB:hsa-miR-4687-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).