Stem-loop sequence hsa-mir-4649

Accession

MI0017276 (change log)

Symbol

HGNC:MIR4649

Description

Homo sapiens miR-4649 stem-loop

Literature search

5 open access papers mention hsa-mir-4649
(9 sentences)

Stem-loop

   u     c      ug   u       g  cug 
5'  cuggg gagggg  ggc cucagag gg   g
    ||||| ||||||  ||| ||||||| ||   c
3'  gaccc cucucc  ccg gagucuc uc   a
   -     -      gu   -       g  aug 

Deep sequencing

98 reads, 0 reads per million, 40 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr7: 44110849-44110912 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR4649
• HGNC:MIR4649
• RNAcentral:URS000075ADD0_9606
• miRBase Tracker:MI0017276

Mature sequence hsa-miR-4649-5p

• Accession: MIMAT0019711
• Sequence: 3 - ugggcgaggggugggcucucagag - 26
• Deep sequencing: 55 reads, 25 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000044FB51_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4649-5p
  • TargetScanVert:hsa-miR-4649-5p
  • miRDB:hsa-miR-4649-5p

Mature sequence hsa-miR-4649-3p

• Accession: MIMAT0019712
• Sequence: 43 - ucugaggccugccucucccca - 63
• Deep sequencing: 36 reads, 22 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4649-3p
  • TargetScanVert:hsa-miR-4649-3p
  • miRDB:hsa-miR-4649-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).