Stem-loop pma-mir-199b

Accession

MI0017102

Description

Petromyzon marinus pma-mir-199b precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

gccucgucugCCCAGUGUUCUGACUACCUGUUCacgugacaagcaaauguaCAGUAGUCUGCACAUUGGUUAgacugggu
((((.(((((.(((((((.(.((((((.(((.((..((.....))..)).))))))))).).))))))).))))).))))

Structure

    c     C       U U      C   U  cg  a 
gccu gucug CCAGUGU C GACUAC UGU Ca  ug c
|||| ||||| ||||||| | |||||| ||| ||  || a
uggg cagAU GGUUACA G CUGAUG ACa gu  ac a
    u     U       C U      -   u  aa  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature pma-miR-199b-5p

• Accession: MIMAT0019507
• Description: Petromyzon marinus pma-miR-199b-5p mature miRNA
• Sequence: 11 - CCCAGUGUUCUGACUACCUGUUC - 33
• Evidence: experimental ; 454 [1]

Mature pma-miR-199b-3p

• Accession: MIMAT0019508
• Description: Petromyzon marinus pma-miR-199b-3p mature miRNA
• Sequence: 52 - CAGUAGUCUGCACAUUGGUUA - 72
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383