Stem-loop pma-mir-19b

Accession

MI0017020

Description

Petromyzon marinus pma-mir-19b precursor miRNA

Gene family

MIPF0000011; mir-19

Sequence

caugcucucccugccAGUUUUGCAUGUUUGCUGUCGGCuugucaaaaugugcUGUGCAAAUCCAUGCAAAACUGAcggugagug
...((((...(((.(((((((((((((((((...((((............)))).)))))..)))))))))))).))).)))).

Structure

cau    ucc   c            --     UGU    uuguc 
   gcuc   cug cAGUUUUGCAUG  UUUGC   CGGC     a
   ||||   ||| ||||||||||||  |||||   ||||      
   ugag   ggc GUCAAAACGUAC  AAACG   GUcg     a
--g    --u   A            CU     --U    uguaa 

Annotation confidence Not enough data

Genome context

GL478379.1: 406814-406897 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from pma-mir-19b

Mature pma-miR-19b-5p

• Accession: MIMAT0019392
• Description: Petromyzon marinus pma-miR-19b-5p mature miRNA
• Sequence: 16 - AGUUUUGCAUGUUUGCUGUCGGC - 38
• Evidence: experimental ; 454 [1]

Mature pma-miR-19b-3p

• Accession: MIMAT0019393
• Description: Petromyzon marinus pma-miR-19b-3p mature miRNA
• Sequence: 53 - UGUGCAAAUCCAUGCAAAACUGA - 75
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383