miRNA Entry for MI0016964

Stem-loop sequence hsa-mir-3960

Accession

MI0016964 (change log)

Symbol

HGNC:MIR3960

Description

Homo sapiens miR-3960 stem-loop

Gene family

MIPF0001271; mir-3960

Literature search

12 open access papers mention hsa-mir-3960
(30 sentences)

Stem-loop

         -   --   -  -    -       a  ggg          g 
5' ggcgcc ccg  gcu cc ccgc gcccccg uc   gccgccgcua u
   |||||| |||  ||| || |||| ||||||| ||   ||||||||||  
3' ccgcgg ggc  cgg gg ggcg cgggggc gg   cggcggcggu a
         a   gg   c  c    a       -  agg          g

Get sequence

Deep sequencing

9652 reads, 95.7 reads per million, 141 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCh38; GCA_000001405.15)	Overlapping transcripts
chr9: 127785833-127785923 [+]	antisense OTTHUMT00000054055 ; SCAI-001; intron 6 OTTHUMT00000356269 ; SCAI-004; intron 6 OTTHUMT00000356268 ; SCAI-003; intron 7 ENST00000336505 ; SCAI-001; intron 6 ENST00000477186 ; SCAI-004; intron 6 ENST00000373549 ; SCAI-003; intron 7

Clustered miRNAs

< 10kb from hsa-mir-3960
hsa-mir-3960	chr9: 127785833-127785923 [+]
hsa-mir-2861	chr9: 127785918-127786007 [+]

Database links

EntrezGene:MIR3960
HGNC:MIR3960
miRBase Tracker:MI0016964

Mature sequence hsa-miR-3960
Accession	MIMAT0019337
Sequence	47 - ggcggcggcggaggcggggg - 66 Get sequence
Deep sequencing	421 reads, 78 experiments
Evidence	by similarity; MI0016963
Predicted targets	TargetMiner:hsa-miR-3960 TargetScanVert:hsa-miR-3960 miRDB:hsa-miR-3960

References
1	PMID:21324897 "A Runx2/miR-3960/miR-2861 regulatory feedback loop during mouse osteoblast differentiation" Hu R, Liu W, Li H, Yang L, Chen C, Xia ZY, Guo LJ, Xie H, Zhou HD, Wu XP, Luo XH J Biol Chem. 286:12328-12339(2011).

miRBase

Stem-loop sequence hsa-mir-3960

Mature sequence hsa-miR-3960

References