Stem-loop csi-MIR3949

Accession

MI0016732

Description

Citrus sinensis csi-MIR3949 precursor miRNA

Sequence

uguuauggccaugcccugccaaguuugcaucacuucaaggcuucuuggggcaacguuucugguuaaaaaguuucagaaaaaugaacaaguuuUGAUGUUGAGGCAAAAAUGUAGgagcuauaau
.((((((((.....(((((....(((((.((((.(((((((((....(..((...(((((((..........)))))))..))..)))))))))).).))).)))))...))))).))))))))

Structure

u        caugc     caag     a   - u         cuug gg  acg       uuaa 
 guuauggc     ccugc    uuugc uca c ucaaggcuu    g  ca   uuucugg    a
 ||||||||     |||||    ||||| ||| | |||||||||    |  ||   |||||||     
 uaauaucg     gGAUG    AAACG AGU G AGUuuugaa    c  gu   aaagacu    a
-        ----a     -UAA     G   U U         ---- aa  -aa       uuga 

Annotation confidence Not enough data

Genome context

chr3: 26424434-26424557 [-]

Mature csi-miR3949

• Accession: MIMAT0018490
• Description: Citrus sinensis csi-miR3949 mature miRNA
• Sequence: 93 - UGAUGUUGAGGCAAAAAUGUAG - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246