Stem-loop csi-MIR827

Accession

MI0016727

Description

Citrus sinensis csi-MIR827 precursor miRNA

Gene family

MIPF0001113; MIR827_3

Literature search

4 open access papers mention csi-MIR827
(5 sentences)

Sequence

gcuuguugauugucaucuaaucauuuucuuuuucauccuagaauuugaaugauuauauggUUAGAUGACCAUCAACAAACAuauucaugguauugcaugc
..((((((((.(((((((((((((.......((((..........)))).......))))))))))))).)))))))).......((((......)))).

Structure

--------------------gc        u             uuucuuu    uccu 
                      uuguugau gucaucuaaucau       uuca    a
                      |||||||| |||||||||||||       ||||     
                      AACAACUA CAGUAGAUUggua       aagu    g
cguacguuaugguacuuauACA        C             uauuagu    uuaa 

Annotation confidence Not enough data

Genome context

JH999145.1: 323612-323711 [+]

Mature csi-miR827

• Accession: MIMAT0018485
• Description: Citrus sinensis csi-miR827 mature miRNA
• Sequence: 61 - UUAGAUGACCAUCAACAAACA - 81
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113