Stem-loop csi-MIR482a

Accession

MI0016722

Description

Citrus sinensis csi-MIR482a precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

5 open access papers mention csi-MIR482a
(23 sentences)

Sequence

aggaaguuuugggAGUGGGAGCGUGGGGUAAGAAGugaagaaaacguauaauuuuucuuuucuuuuucaauugagaaagaaaauuacaaauucaauuUCUUCCCUAUGCCUCCCAUUCCuaugauuucc
.(((((((.(((((((((((((((((((.(((((((((((((((........)))))(((((((((((....))))))))))).......))).)))))))))))))).)))))))))))).)))))))

Structure

a       u            -       U       -   gaaaacguauaauuuuuc           a 
 ggaaguu ugggAGUGGGAG CGUGGGG AAGAAGu gaa                  uuuucuuuuuc a
 ||||||| |||||||||||| ||||||| ||||||| |||                  |||||||||||  
 ccuuuag auCCUUACCCUC GUAUCCC UUCUuua cuu                  aaaagaaagag u
-       u            C       -       a   -----------aaacauu           u 

Annotation confidence Not enough data

Genome context

chr2: 9941395-9941523 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR482a

Mature csi-miR482a-5p

• Accession: MIMAT0018479
• Description: Citrus sinensis csi-miR482a-5p mature miRNA
• Sequence: 14 - AGUGGGAGCGUGGGGUAAGAAG - 35
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR482a-3p

• Accession: MIMAT0018480
• Description: Citrus sinensis csi-miR482a-3p mature miRNA
• Sequence: 98 - UCUUCCCUAUGCCUCCCAUUCC - 119
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113