Stem-loop sequence csi-MIR482a

AccessionMI0016722 (change log)
DescriptionCitrus sinensis miR482a stem-loop
Gene family MIPF0000403; MIR482
Literature search

5 open access papers mention csi-MIR482a
(22 sentences)

Stem-loop
   a       u            -       u       -   gaaaacguauaauuuuucuuuucu 
5'  ggaaguu ugggagugggag cgugggg aagaagu gaa                        u
    ||||||| |||||||||||| ||||||| ||||||| |||                        u
3'  ccuuuag auccuuacccuc guauccc uucuuua cuu                        u
   -       u            c       -       a   aaacauuaaaagaaagaguuaacu 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Csi_valencia_1.0; GCA_000317415.1) Overlapping transcripts
chr2: 9941395-9941523 [+]
intergenic
Clustered miRNAs
< 10kb from csi-MIR482a
csi-MIR482bchr2: 9932506-9932614 [+]
csi-MIR482achr2: 9941395-9941523 [+]
csi-MIR482gchr2: 9942925-9943053 [+]
Database links

Mature sequence csi-miR482a-5p

Accession MIMAT0018479
Previous IDscsi-miR482a*
Sequence

14 - 

agugggagcgugggguaagaag

 - 35

Get sequence
Evidence experimental; Illumina [1-2]

Mature sequence csi-miR482a-3p

Accession MIMAT0018480
Previous IDscsi-miR482a
Sequence

98 - 

ucuucccuaugccucccauucc

 - 119

Get sequence
Evidence experimental; Illumina [1-2]

References

1
PMID:20398412 "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type" Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X BMC Genomics. 11:246(2010).
2
PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).