Stem-loop csi-MIR477c

Accession

MI0016717

Description

Citrus sinensis csi-MIR477c precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

1 open access papers mention csi-MIR477c
(3 sentences)

Sequence

ccaaagcaguagagucguucACUCUCCCUCAAGGGCUUCGCcacaauccaaaucaugcugaacagguggguggguugaugcuGAAGUCCUUGGGGUUGAGUGAucgacgccuguuuuuuaacucgcuaaugacgaucgcagaagacaacucgaaggcua
.............((((.((((((..((((((((((((((.(((((((((..((((.........)))).))))))).)).))))))))))))))..)))))).))))(((((((((((...((((....).)))....))))))).......))))..

Structure

--------------------------------------ccaaagcaguaga    u      UC              C  -       aa    gcu 
                                                   gucg ucACUC  CCUCAAGGGCUUCG ca caaucca  ucau   g
                                                   |||| ||||||  |||||||||||||| || |||||||  ||||   a
                                                   cagc AGUGAG  GGGGUUCCUGAAGu gu guugggu  ggug   a
aucggaagcucaacagaagacgcuagcaguaaucgcucaauuuuuuguccg    u      UU              c  a       -g    gac 

Annotation confidence Not enough data

Genome context

Unknown

Mature csi-miR477c-5p

• Accession: MIMAT0018474
• Description: Citrus sinensis csi-miR477c-5p mature miRNA
• Sequence: 21 - ACUCUCCCUCAAGGGCUUCGC - 41
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR477c-3p

• Accession: MIMAT0037408
• Description: Citrus sinensis csi-miR477c-3p mature miRNA
• Sequence: 83 - GAAGUCCUUGGGGUUGAGUGA - 103
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113