Stem-loop csi-MIR482f

Accession

MI0016716

Description

Citrus sinensis csi-MIR482f precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

4 open access papers mention csi-MIR482f
(6 sentences)

Sequence

gggaagucuuggaGAUGGGUGAGUUGGGAAAAUAauaacuuucuucacgaaagaaagcaauuuUUUUCCCACACCUCCCAUCCCuaagauuuuc
.(((((((((((.((((((.(.((((((((((.(((..(((((((.....)))))))..))).)))))))).))).)))))).)))))))))))

Structure

g           a      U A  -        U   aa       c 
 ggaagucuugg GAUGGG G GU UGGGAAAA Aau  cuuucuu a
 ||||||||||| |||||| | || |||||||| |||  ||||||| c
 cuuuuagaauC CUACCC C CA ACCCUUUU uua  gaaagaa g
-           C      U -  C        u   ac       a 

Annotation confidence Not enough data

Genome context

chr2: 9962813-9962906 [+]

Mature csi-miR482f-3p

• Accession: MIMAT0018473
• Description: Citrus sinensis csi-miR482f-3p mature miRNA
• Sequence: 64 - UUUUCCCACACCUCCCAUCCC - 84
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR482f-5p

• Accession: MIMAT0037407
• Description: Citrus sinensis csi-miR482f-5p mature miRNA
• Sequence: 14 - GAUGGGUGAGUUGGGAAAAUA - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113