Stem-loop sequence csi-MIR399b

Accession

MI0016713 (change log)

Description

Citrus sinensis miR399b stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention csi-MIR399b
(12 sentences)

Stem-loop

   gaagcagu    -  uu            uu                g  ggccaagggcaaagaucauauaauauauuuauau 
5'         aagc ga  uaguuguagggc  cucuccuuuggcaggu au                                  a
           |||| ||  ||||||||||||  |||||||||||||||| ||                                  u
3'         uucg cu  gucaauaucccg  gagaggaaaccgucca ua                                  a
   aauaaauu    a  uc            uu                g  acuuuuuuaucuuguuauuaaucuuauccguggu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr5: 7022847-7023016 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016713

Mature sequence csi-miR399b-5p

• Accession: MIMAT0037404
• Sequence: 24 - agggcuucucuccuuuggcag - 44
• Evidence: experimental; Illumina [2]

Mature sequence csi-miR399b-3p

• Accession: MIMAT0018470
• Sequence: 127 - ugccaaaggagaguugcccua - 147
• Evidence: experimental; Illumina [1-2]

References

1. PMID:20398412 "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type" Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X BMC Genomics. 11:246(2010).
2. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).